YRC Public Data Repository - Protein Structure Prediction

Protein:	CE14196
Organism:	Caenorhabditis elegans
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE14196.

Description	E-value	Query Range	Subject Range
ATPA_DICDI - ATP synthase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=atp1 PE=1 SV=1	165.0	[0..1]	[104..238]
ATPA_PELUB - ATP synthase subunit alpha OS=Pelagibacter ubique (strain HTCC1062) GN=atpA PE=3 SV=1 gi\|91718441, gi\|... - gi\|91762639\|ref\|ZP_01264604.1\| ATP synthase subunit A [Candidatus Pelagibacter ubique HTCC1002], gi\|... ATPA_PELUB - ATP synthase subunit alpha OS=Pelagibacter ubique GN=atpA PE=3 SV=1	165.0	[0..1]	[104..227]
ATPA_DICCI - ATP synthase subunit alpha, mitochondrial OS=Dictyostelium citrinum GN=atp1 PE=3 SV=1	164.0	[0..1]	[104..238]
ATPA_RICFE - ATP synthase subunit alpha OS=Rickettsia felis GN=atpA PE=3 SV=1 ATPA_RICFE - ATP synthase subunit alpha OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=atpA PE=3 SV=1	163.0	[0..1]	[104..226]
ATPA_RICPR - ATP synthase subunit alpha OS=Rickettsia prowazekii GN=atpA PE=3 SV=2 ATPA_RICPR - ATP synthase subunit alpha OS=Rickettsia prowazekii (strain Madrid E) GN=atpA PE=3 SV=2	163.0	[0..1]	[104..226]
gi\|2665936 - gi\|2665936\|gb\|AAB88551.1\| putative F1-ATP synthase alpha subunit [Rickettsia prowazekii]	163.0	[0..1]	[104..226]
gi\|95133942, gi\|... - gi\|95929973\|ref\|ZP_01312713.1\| ATP synthase F1, alpha subunit [Desulfuromonas acetoxidans DSM 684], ...	163.0	[0..1]	[104..218]
ATPA_RICTY - ATP synthase subunit alpha OS=Rickettsia typhi GN=atpA PE=3 SV=1 ATPA_RICTY - ATP synthase subunit alpha OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=atpA PE=3 SV=1	162.0	[0..1]	[104..226]
ATPA_RICRS - ATP synthase subunit alpha OS=Rickettsia rickettsii (strain Sheila Smith) GN=atpA PE=3 SV=1 ATPA_RICRO - ATP synthase subunit alpha OS=Rickettsia rickettsii (strain Iowa) GN=atpA PE=3 SV=2 gi\|53732377 - gi\|53732377\|ref\|ZP_00154186.2\| COG0056: F0F1-type ATP synthase, alpha subunit [Rickettsia rickettsii...	162.0	[0..1]	[104..226]
ATPA_SYMTH - ATP synthase subunit alpha OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=atpA PE=3 SV=1 ATPA_SYMTH - ATP synthase subunit alpha OS=Symbiobacterium thermophilum GN=atpA PE=3 SV=1	162.0	[0..1]	[104..218]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYTIVVSAT ASDAAPLKFL APYSGCAIGE HFLDNGKHAL IIFDDLSKKA ANCHVVCRTD  60
   61 EIELDILNRM EEDIKLHPLT WYDIWSSLET KIKVVRARIP KSLSRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.522879
Match:	1mabA
Description:	F1 ATP synthase alpha subunit, domain 3; F1 ATP synthase alpha subunit, domain 1; Central domain of alpha subunit of F1 ATP synthase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits