YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE13744
Organism: Caenorhabditis elegans
Length: 400 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13744.

Description E-value Query
Range
Subject
Range
gi|157745447 - gi|157745447|ref|XP_001667820.1| Hypothetical protein CBG14914 [Caenorhabditis briggsae AF16]
gi|187027548, gi... - gi|39598242|emb|CAE68934.1| Hypothetical protein CBG14914 [Caenorhabditis briggsae], gi|187027548|em...
567.0 [0..6] [400..36]

Back

Predicted Domain #1
Region A:
Residues: [1-116]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPSNMNVLE QAELVIDGGD PGDEQQVAHE EIVDDGSTEM VVDHHHHPQL RGNPMHHHHY  60
   61 DNRQSAPAYQ VPQQQSQSIR RGVGRPMAPR PQSYPHNMDM VQKLQNKNVY MPAQQR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [117-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQTRISPAGA RIVSFAGRKR DNSDGLPPGV KKMNMPAARP HQQQTQQQSH LQQGQQSQKN  60
   61 LQPVKVVRLA SSVARANPTA SEHALIEIEN NIKQTIEDAK VDTERLRELQ EADFSQDEYH 120
  121 QYLGMLIMDL ERSNEANSTL TTYYRERQRH EKTISEAREN AFSARIRQLE TENRKLRDSI 180
  181 HVMYYGKFNE AGG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [310-400]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNNIYRNDHM GQMMVEEPEE HVVIEGHVGN NQEGEEVPQE WIVEETVDEH RMHLEGMEAD  60
   61 DHMVEDQQQQ DEEHEDVKDK NLLAGGSGRS G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle