YRC Public Data Repository - Protein Structure Prediction

Protein:	cav-1
Organism:	Caenorhabditis elegans
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cav-1.

Description	E-value	Query Range	Subject Range
gi\|157755129 - gi\|157755129\|ref\|XP_001669908.1\| Hypothetical protein CBG15010 [Caenorhabditis briggsae AF16] gi\|187027432, gi... - gi\|39598320\|emb\|CAE69013.1\| Hypothetical protein CBG15010 [Caenorhabditis briggsae], gi\|187027432\|em...	328.0	[0..1]	[235..1]
gi\|109067942 - gi\|109067942\|ref\|XP_001101417.1\| PREDICTED: caveolin 1, caveolae protein, 22kDa isoform 3 [Macaca mu...	252.0	[0..63]	[221..132]
gi\|62089438 - gi\|62089438\|dbj\|BAD93163.1\| caveolin 1 variant [Homo sapiens]	247.0	[0..89]	[221..77]
gi\|73586677 - gi\|73586677\|gb\|AAI03051.1\| CAV1 protein [Bos taurus]	247.0	[0..89]	[221..46]
CAV1_DIDVI - Caveolin-1 OS=Didelphis virginiana GN=CAV1 PE=3 SV=1	246.0	[0..89]	[221..38]
gi\|30585215, gi\|... - gi\|61370990\|gb\|AAX43589.1\| caveolin 1 [synthetic construct], gi\|30585215\|gb\|AAP36880.1\| Homo sapiens...	246.0	[0..89]	[221..38]
CAV1_ORNAN - Caveolin-1 OS=Ornithorhynchus anatinus GN=CAV1 PE=3 SV=1	245.0	[0..89]	[223..38]
CAV1_RABIT - Caveolin-1 OS=Oryctolagus cuniculus GN=CAV1 PE=3 SV=1	245.0	[0..89]	[221..38]
CAV1_PONPY - Caveolin-1 - Pongo pygmaeus (Orangutan) CAV1_PONAB - Caveolin-1 OS=Pongo abelii GN=CAV1 PE=3 SV=1	245.0	[0..89]	[221..38]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTEQDIKTE EQIPLTYAAV AAPTVQTEGE AVVAPEEPKP KKNWFTFGKK KAAPTDETNI  60
   61 EEGGAPGDEP VKEKKEKKCW WSRCQKGEGE QKEENIAIGV DLVNRDANSM NNHVQLNFED 120
  121 IFGEADSQHS WDCVWRLNHT VFTAVRLFIY RLVSLLALPF TIIFAIFFGL LASINVFIIV 180
  181 PLGKLLSIPG TLLAKLWNWL IHAIFDPIAS AVGLIFSNFN IRKYGINQET TAPCV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	109.958607
Match:	PF01146.8
Description:	No description for PF01146.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits