YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: cyb-3
Organism: Caenorhabditis elegans
Length: 384 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cyb-3.

Description E-value Query
Range
Subject
Range
gi|73999528 - gi|73999528|ref|XP_544149.2| PREDICTED: similar to G2/mitotic-specific cyclin B1 [Canis familiaris]
324.0 [0..6] [374..24]

Back

Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSQAKNVD LTSQADSRHQ QKRKQAEQLD ALKNPSEPAA KKQHSKGLTE LRAHISGFKI  60
   61 DSAKRDPLGK SRTSRRDVEN LPPQKSRYVD PCPHYDYDLE EAG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPDSISDYAQ GIFDYYRHRE VHFRVRKYLH KHPEVDVKTR AILIDWMVEI QETFELNHET  60
   61 LYNAVKLTDM YLCKTKNVDK NTIQKLACVA IFIAAKYDER SPPLVDDLIY LSGDRFSRDE 120
  121 LLAMERELFA TVGYDLGSPL SYRYLRRFGR VCRVDMKTLT MGRFILETSL MVYEYAMVSQ 180
  181 SRLAAAAFVL AMRMLDKNNE YEWNPVLEKY SGFTGEEVMP LVEHMNHILH FSKDKWAQLT 240
  241 SVRQKYSHEV FFHVASIPML PDTLKVVDSH TYAPVPMLSY P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.0
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle