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View Structure Prediction Details

Protein: acl-8
Organism: Caenorhabditis elegans
Length: 344 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for acl-8.

Description E-value Query
Range
Subject
Range
gi|187024225, gi... - gi|39594307|emb|CAE71885.1| Hypothetical protein CBG18940 [Caenorhabditis briggsae], gi|187024225|em...
gi|157764006 - gi|157764006|ref|XP_001674346.1| Hypothetical protein CBG18940 [Caenorhabditis briggsae AF16]
232.0 [0..1] [344..1]

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Predicted Domain #1
Region A:
Residues: [1-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVIKGVTFI VLVFFSSLLG TVFLLFPLIP LAWFAPKLWR TCADRLVGFW LTFPCSLIEW  60
   61 VFGVNFRVTG DLIERDEPAI LIMNHRTRLD WLFSWNALYK MDPWLLTTEK ISLKAPLKKI 120
  121 PGAGWAMSSG SYIFLDRNFE NDKPVLERIV KYYSGSEKKY QILLFAEGTD KGERATRLSD 180
  181 AFADKNGLPR YEYVLHPRTT GFKFLMELMK KENYIKYVYD LTIAYSGTIV DTEAKLLAG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 1iuqA
Description: The 1.55 A Crystal Structure of Glycerol-3-Phosphate Acyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [240-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFPDKVHLDV KKYKLDEIPT GEGCEKWLTD LWATKEKRLK KFYEQEERLE ASGDRFEWPE  60
   61 TTTGIGYYVA FAFWVLASLI WMGAIYSLLW VKVINRFYGD CYSFA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle