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View Structure Prediction Details

Protein: CE12778
Organism: Caenorhabditis elegans
Length: 370 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12778.

Description E-value Query
Range
Subject
Range
gi|147906156, gi... - gi|27696436|gb|AAH43981.1| Ilf2-prov protein [Xenopus laevis], gi|147906156|ref|NP_001080575.1| inte...
386.0 [0..8] [366..18]

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Predicted Domain #1
Region A:
Residues: [1-370]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPGGNFPQF GVPIPQFRTI YDYTLDKGNL EGTKNTSDAV FEKEILDRAA NLTPSVEIRK  60
   61 RINEYAKKVI VALEKEKREK TLVDIGIATI SHVGSFVTDT TTHSSDKSDV VVQLSTLPSY 120
  121 ETVAELGRKV VENMKIADPK ETGEPLQMEY GCLITSHNCQ VRLLITIIPE ESTKLEPLLH 180
  181 LDSKQMMINF FSTRHITWFS QISSELPPAF IQEWQALVRV LKDTRSRYSD FQPLSIWTIQ 240
  241 YLAFYCLANG PNRQKACLGT AFRRFFEIIA AGIFLPKSPC LIDPVSANYR IGFDLTLPQM 300
  301 DTVCMGAQTL VRIFATGNDG YRAILGTHGT AADLTQTIST WKGIEIRPSI DAYRDGCMTR 360
  361 FPARAEIPTV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.221849
Match: 1px5A
Description: Crystal structure of the 2'-specific and double-stranded RNA-activated interferon-induced antiviral protein 2'-5'-oligoadenylate synthetase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.222270543382941 bayes_pls_golite062009
transferase activity 0.00393984128503999 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle