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View Structure Prediction Details

Protein: CE12738
Organism: Caenorhabditis elegans
Length: 576 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12738.

Description E-value Query
Range
Subject
Range
gi|73981582 - gi|73981582|ref|XP_533056.2| PREDICTED: similar to selenium binding protein 1 [Canis familiaris]
636.0 [0..83] [526..155]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLNIYFIL QICSHTDTYF FIYSLSITLF FFSKYKMGVC ISHEYSKPNA EQAEILQDFS  60
   61 KFMKPEERPP MAVEHQMYDY RLVEE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQDDELFAIV CCPHSIGYER DKIALVDLDP TSETFCTILS EVHLTSNGDE PGRMNWAKSA  60
   61 ESLGEMNKFV RRNIIVPCMN SGKIYVIAFE NEKLWIEKEI RNDELIRKDV SCPYAVRSLP 120
  121 LKGAPVHVST LGDRFGNGKG DFILIDRRTW EVRKKSEPTF SD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [248-483]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGGDFSLQPR HNLMISSEWG HPRLLRDGFM PSELENVSES FGARLHVWQI SPPKLIQSIN  60
   61 LDTCDGSLVI CVKFLHNADC NHAFAISAIG SSIFHLHMNT LTKEWAADRV AHVPLLKVEN 120
  121 WQSDEMPALL TDMIISMDDR WLYVCGFLHG VLWRFDIQDP FRVSLHGKIN LGGIFDSFPE 180
  181 VRIKTSNAME DRWWLPPETR SLPRGTKFRG GPALMQLSKD GCRLYVCNSF YKAWDA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.39794
Match: 1ri6A
Description: Structure of a putative isomerase from E. coli
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [484-576]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFYPELISDG GQMIRVDIVD DEMQLNEKFL IDMKKPSLIQ NYRIFKKSVC LMPPIQKYLL  60
   61 DYNTTYFYTN FIKVYNYQFT CNVSFRDNQT AHL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle