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View Structure Prediction Details

Protein: CE12672
Organism: Caenorhabditis elegans
Length: 485 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12672.

Description E-value Query
Range
Subject
Range
gi|91089229 - gi|91089229|ref|XP_968302.1| PREDICTED: similar to CG5304-PA [Tribolium castaneum]
299.0 [0..34] [482..577]

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Predicted Domain #1
Region A:
Residues: [1-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTADKVAPLP QKGVAVAIPD TKSSNDDSKD QPGYVRYLIM ISTMLCLTSL MSNVVCFNFT  60
   61 VLCMPGSGET GELVGNRTHF VGYTRQEKTV LLSTVAIGAV CGVFPVIIGI SKLGLKKVFM 120
  121 TSGVLTAIST FLIPILAPLH FHLFIMLRFV QGLSYAACFP AVGAITSSWA SLAQQGLFIA 180
  181 ALTTFGQTSS IFSMPVAGEL CTSVFGWKSV FYLHAIISLV VFTIWFALFT DSPEDNKLVR 240
  241 PAELAEIEFG KSEDEIHEHS NTPYLEILTT PSVWGIWIGA FGDLIAVQLI HIYSPVFLHD 300
  301 VGGYSFEKTG FAAAVPVLFQ FFVKMFAGHS SDKVHGISET TKLRIYNTIA LGASAIFLVS 360
  361 LGFVKQGQGV LGLVLMTLAT GMFGFNGGGF SKCAALVSRQ YNHFVMAIQQ ILVCLSMIVC 420
  421 PIIVSTILQH GTTAEWRIVF FVHAAILLIC NAIFCWLATA KPAPWTDRTI KHSATKNTPL 480
  481 YQTKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.522879
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
substrate-specific transmembrane transporter activity 5.46247398538901 bayes_pls_golite062009
ion transmembrane transporter activity 4.58978526526921 bayes_pls_golite062009
transporter activity 4.09176719149278 bayes_pls_golite062009
anion transmembrane transporter activity 3.94605227012838 bayes_pls_golite062009
cation transmembrane transporter activity 3.88180006470231 bayes_pls_golite062009
substrate-specific transporter activity 3.59744164024479 bayes_pls_golite062009
transmembrane transporter activity 3.5865018981083 bayes_pls_golite062009
inorganic anion transmembrane transporter activity 2.52916479889426 bayes_pls_golite062009
phosphate transmembrane transporter activity 1.78662033436109 bayes_pls_golite062009
active transmembrane transporter activity 1.59419818573076 bayes_pls_golite062009
secondary active transmembrane transporter activity 1.22264637452409 bayes_pls_golite062009
polyol transmembrane transporter activity 0.924836669821548 bayes_pls_golite062009
alcohol transmembrane transporter activity 0.924836669821548 bayes_pls_golite062009
glycerol transmembrane transporter activity 0.812001619402678 bayes_pls_golite062009
binding 0.805286077372817 bayes_pls_golite062009
solute:cation symporter activity 0.74591237387473 bayes_pls_golite062009
symporter activity 0.74591237387473 bayes_pls_golite062009
cation:sugar symporter activity 0.143419068761182 bayes_pls_golite062009
sugar:hydrogen symporter activity 0.143419068761182 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle