YRC Public Data Repository - Protein Structure Prediction

Protein:	CE12662
Organism:	Caenorhabditis elegans
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12662.

Description	E-value	Query Range	Subject Range
gi\|115955498, gi... - gi\|72156901\|ref\|XP_793771.1\| PREDICTED: similar to HIU hydrolase [Strongylocentrotus purpuratus], gi...	189.0	[0..1]	[121..25]
HIUH_PSEAE, YF18... - (Q9I3J5) Hypothetical transthyretin-like protein PA1518, Putative transthyretin-like protein PA1518 ... gi\|126193245, gi... - gi\|254239867\|ref\|ZP_04933189.1\| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi\|194... gi\|218772834, gi... - gi\|218892606\|ref\|YP_002441475.1\| putative transthyretin family protein [Pseudomonas aeruginosa LESB5... HIUH_PSEAE - 5-hydroxyisourate hydrolase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG...	188.0	[0..1]	[121..1]
gi\|49077538 - gi\|49077538\|gb\|AAT49690.1\| PA1518 [synthetic construct]	188.0	[0..1]	[121..1]
gi\|194545599, gi... - gi\|254234614\|ref\|ZP_04927937.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19... gi\|116049462, gi... - gi\|116049462\|ref\|YP_791735.1\| putative transthyretin family protein [Pseudomonas aeruginosa UCBPP-PA...	187.0	[0..1]	[121..1]
gi\|107100949 - gi\|107100949\|ref\|ZP_01364867.1\| hypothetical protein PaerPA_01001979 [Pseudomonas aeruginosa PACS2] gi\|84328432 - gi\|84328432\|ref\|ZP_00976439.1\| COG2351: Transthyretin-like protein [Pseudomonas aeruginosa 2192]	179.0	[0..10]	[121..1]
gi\|94415074 - gi\|94415074\|ref\|ZP_01294923.1\| hypothetical protein PaerP_01003182 [Pseudomonas aeruginosa PA7]	178.0	[0..10]	[121..1]
CE34083 - transthyretin like status:Confirmed UniProt:Q21882 protein_id:CAB00872.2	177.0	[0..1]	[121..15]
gi\|53727731 - gi\|53727731\|ref\|ZP_00139144.2\| COG2351: Transthyretin-like protein [Pseudomonas aeruginosa UCBPP-PA1... gi\|84321704 - gi\|84321704\|ref\|ZP_00970058.1\| COG2351: Transthyretin-like protein [Pseudomonas aeruginosa C3719]	177.0	[0..10]	[121..1]
gi\|109463139, gi... - gi\|109463139\|ref\|XP_001057865.1\| PREDICTED: similar to Hypothetical transthyretin-like protein R09H1...	176.0	[0..3]	[121..12]
gi\|224468924, gi... - gi\|224584397\|ref\|YP_002638195.1\| hypothetical protein SPC_2653 [Salmonella enterica subsp. enterica ... gi\|238911081 - gi\|238911081\|ref\|ZP_04654918.1\| hypothetical protein SentesTe_08087 [Salmonella enterica subsp. ente... HIUH_SALTY - 5-hydroxyisourate hydrolase OS=Salmonella typhimurium GN=hiuH PE=3 SV=1 YEDX_SALTY - Transthyretin-like protein OS=Salmonella typhimurium GN=yedX PE=3 SV=1 lcl\|NC_016856.1_... - [gene=STM14_1243] [protein=hypothetical protein] [protein_id=YP_005236831.1] [location=1142797..1143... gi\|205328344, gi... - gi\|205328344\|gb\|EDZ15108.1\| hydroxyisourate hydrolase [Salmonella enterica subsp. enterica serovar 4... HIUH_SALTY - 5-hydroxyisourate hydrolase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=hiuH ... gi\|197262898, gi... - gi\|197262898\|ref\|ZP_03162972.1\| hydroxyisourate hydrolase [Salmonella enterica subsp. enterica serov... gi\|62179617, gi\|... - gi\|62179617\|ref\|YP_216034.1\| hypothetical protein SC1047 [Salmonella enterica subsp. enterica serova... gi\|205347396, gi... - gi\|205347396\|gb\|EDZ34027.1\| hydroxyisourate hydrolase [Salmonella enterica subsp. enterica serovar H...	173.0	[0..13]	[121..28]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTITESAVPT ASISAHVLDI SGGSPAGGVQ ILAYIQQNDD WTKIGSEFTQ DNGRVDWVSP  60
   61 DFTLIPGTYR LVYITEPYYK AKNVESFYPY VEVVFNIRDA TQHYHVPLTL SPWGYSTYRG 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.0
Match:	2g2nA
Description:	No description for 2g2nA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits