YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE12592
Organism: Caenorhabditis elegans
Length: 773 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12592.

Description E-value Query
Range
Subject
Range
gi|39584283, gi|... - gi|39584283|emb|CAE65447.1| Hypothetical protein CBG10411 [Caenorhabditis briggsae], gi|187031021|em...
gi|157761001 - gi|157761001|ref|XP_001672843.1| Hypothetical protein CBG10411 [Caenorhabditis briggsae AF16]
713.0 [0..8] [771..1]

Back

Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTTLTCLYI LATISSAVYG AVTDETRQAV QEALFEALNT VDSSFSSEPS VADGAIVSSQ  60
   61 IANAESKQLQ FTGDVLEIAT QILVKKYGVD ILEDANEVLT ELNAGESSAR KKRSVDEVEQ 120
  121 ESFVANLRQK RQSRGKRQGG GGGGRGGGGG GRGGDG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [157-773]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRSGEQDGRK KRNSGEQQGG GGRTEYSPPK SNATCQGPPK SCSDPVHDRI RSITGYCNNR  60
   61 GKPTQANSVT AIRRLLGTTS YTDGLQAIRN TSVTGSPLPS TRLISNKLHD EGSTPNFSPS 120
  121 VNHLHMQIGQ FIAHDIIFMP SSTAKDGSSL NCTSCSSPTT ISTNCAPIPA PADDKYFTPV 180
  181 SRTEARCIRL TRALNGQSGF GVRTQIDQNS HYLDMSAVYG SSDCEARTVR SFQNGLLLTN 240
  241 TGIGYVLPPQ APNDTNCQST NPYYCFTAGD FRNCLHPGLL PLHIVFIKEH NRLAVKVKAA 300
  301 QPSWNDEQIY QFVRKIMVAQ WQQIVYNEYL PKLLTDKYLT DFNLKPMKPG AGPFQGYSTS 360
  361 MNAALSGEFA AAAFRFGHSQ SRQDFARQDA TNKTIGAYDL GNNIFYADQV YQKSLGGSET 420
  421 MLLGLIKTAG MQVDRYFSFP IRNQLFEIRG KNGSGVDLIS VNIMRGRDVG LMPYVKYRTL 480
  481 VGLSPVDTWN DLSSTFTAAN LAALKTVYAD PADIDLYTGL VMETPLAGGQ LGPTASWIIA 540
  541 EQFRALKTGD RFYYENGVAN TVGFTPTQID AIRRVKLAKI FCENTAIITS INTDIFDLNS 600
  601 SQVACSSIPD IDIRLFF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 162.0
Match: 2ikcA
Description: No description for 2ikcA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle