YRC Public Data Repository - Protein Structure Prediction

Protein:	CE12322
Organism:	Caenorhabditis elegans
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE12322.

Description	E-value	Query Range	Subject Range
CE18102 - status:Partially_confirmed UniProt:Q9TZZ9 protein_id:AAB94148.1	222.0	[0..1]	[266..1]
ERI1 - exoribonuclease 1 gi\|123979876, gi... - gi\|123994641\|gb\|ABM84922.1\| three prime histone mRNA exonuclease 1 [synthetic construct], gi\|1239798...	180.0	[0..17]	[254..86]
gi\|187030858, gi... - gi\|39583569\|emb\|CAE65673.1\| Hypothetical protein CBG10739 [Caenorhabditis briggsae], gi\|187030858\|em... gi\|157758445 - gi\|157758445\|ref\|XP_001671566.1\| Hypothetical protein CBG10739 [Caenorhabditis briggsae AF16]	180.0	[0..5]	[266..8]
gi\|114623463 - gi\|114623463\|ref\|XP_001136735.1\| PREDICTED: histone mRNA 3' end-specific exonuclease isoform 1 [Pan ...	179.0	[0..17]	[254..86]
ERI1_RAT - 3'-5' exoribonuclease 1 OS=Rattus norvegicus GN=Eri1 PE=2 SV=1	178.0	[0..17]	[254..82]
gi\|52348140, gi\|... - gi\|52785638\|ref\|YP_091467.1\| DNA polymerase III PolC [Bacillus licheniformis ATCC 14580], gi\|5234814...	177.0	[0..8]	[265..365]
gi\|73979366 - gi\|73979366\|ref\|XP_539997.2\| PREDICTED: similar to histone mRNA 3 end-specific exonuclease [Canis fa...	177.0	[0..17]	[254..86]
DPO3_BACSU - DNA polymerase III polC-type OS=Bacillus subtilis GN=polC PE=1 SV=2 gi\|221318783 - gi\|221318783\|ref\|ZP_03600077.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH64... gi\|221313860 - gi\|221313860\|ref\|ZP_03595665.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB... gi\|221323055 - gi\|221323055\|ref\|ZP_03604349.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] DPO3_BACSU - DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168) GN=polC PE=1 SV=2	177.0	[0..8]	[265..364]
gi\|81673840, gi\|... - gi\|84000359\|ref\|NP_001033281.1\| three prime histone mRNA exonuclease 1 [Bos taurus], gi\|81673840\|gb\|...	177.0	[0..17]	[254..86]
DPO3_OCEIH - DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /... DPO3_OCEIH - DNA polymerase III polC-type OS=Oceanobacillus iheyensis GN=polC PE=3 SV=1	175.0	[0..8]	[265..357]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSINFTRTPK LLLDKVAHYS SFVESTKLVK TRDVKKPPRY PSFSVKKPTK NQKISQHFDY  60
   61 LLVLDFEATC QDNWKGPMHP VQEIIEFPVV QLSTADWSEI RRFHQYIKPT EFPRLTSFCT 120
  121 SLTRIIQEMV DEKPKLPEVL SEFDSWLKED SRLKQGNFAF VTCGDWDLKV ALPSEAKFKN 180
  181 IEIPEYFNQW INVKKAYAEH TNHFAKGMTQ LLAIYKLQHQ GRLHSGIDDV ANICEIVRCL 240
  241 GRDGHNYRIT GSKDTMTRRV FRDARK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.0
Match:	1zbuA
Description:	No description for 1zbuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits