YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: lips-14
Organism: Caenorhabditis elegans
Length: 275 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lips-14.

Description E-value Query
Range
Subject
Range
CE06436 - WBGene00011725 lipase status:Partially_confirmed TR:Q22420 protein_id:CAA98139.1
258.0 [0..15] [267..19]
gi|187033636, gi... - gi|39586959|emb|CAE62894.1| Hypothetical protein CBG07082 [Caenorhabditis briggsae], gi|187033636|em...
gi|157753888 - gi|157753888|ref|XP_001680656.1| Hypothetical protein CBG07082 [Caenorhabditis briggsae AF16]
250.0 [0..36] [257..1]

Back

Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGVWSCCVL ETRVFIDLKF NINALADFDF TLGMRVLVHS LVLWAFVATS SAYFSDSFMA  60
   61 YFDYSHQNLV HALAREDLQE DGSFGGGNHT GGTPTS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IQLLKKIHTA QQNIQWWSKR IASMINLVHQ YTGRTVDIVA YGEGSAIARK AVIGGECADT  60
   61 GVMVESQLAK VQTYISEEGI NQGIYCSYST THTCQNMVTG LNCNSKFMKD INSNNTLPTD 120
  121 EVQPIFYSIQ FGLGIARNEC GSDPYEIPGA HQVYRLLKSI PYGVPLVAGI LNGNVQSLV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.522879
Match: 1t4mA
Description: STRUCTURE OF A THERMOSTABLE DOUBLE MUTANT OF BACILLUS SUBTILIS LIPASE OBTAINED THROUGH DIRECTED EVOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.866238607554457 bayes_pls_golite062009
hydrolase activity 0.52702612560045 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle