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View Structure Prediction Details

Protein: nlp-4
Organism: Caenorhabditis elegans
Length: 213 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nlp-4.

Description E-value Query
Range
Subject
Range
gi|157776253 - gi|157776253|ref|XP_001666192.1| hypothetical protein CBG09156 [Caenorhabditis briggsae AF16]
gi|187032067, gi... - gi|39582018|emb|CAE64449.1| Hypothetical protein CBG09156 [Caenorhabditis briggsae], gi|187032067|em...
136.0 [0..1] [104..39]
ttr-44 - Transthyretin-like family status:Confirmed UniProt:Q18878 protein_id:CAB01136.1
134.0 [0..3] [110..40]

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Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMDIFSEAQ MFRYEDFMDR WTNEKGEFDF KAYVTTDAYM ITPYVVIIHR CWESKEVPHR  60
   61 CDRKIVQPIP PLNVTVNSKT PDEKKVYNFG KVDLRFKNPA EVTS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMRSLILFVI LLVAFAAARP VSEEVDRVKR DYDPRTEAPR RLPADDDEVD GEDRVKRDYD  60
   61 PRTDAPIRVP VDPEAEGEDR VKRDLSFSPN TEAPQPPPKH HPVPIESAN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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