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View Structure Prediction Details

Protein: CE11406
Organism: Caenorhabditis elegans
Length: 477 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11406.

Description E-value Query
Range
Subject
Range
gi|46107656, gi|... - gi|46107656|ref|XP_380887.1| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi|42547814|gb|E...
271.0 [0..25] [435..1460]

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Predicted Domain #1
Region A:
Residues: [1-477]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIIIETSWD VVYLCGYFSL VVYFQYAIFT TIMYTYMTKL DPSVGPTSFG LAVTLHGIGH  60
   61 CLGALAAAWW TKKRYKGKKP MCVGYLLMLL SNCLFLLADH VPAETSAFYI MLCRFLGGLG 120
  121 MGNTSTLRTT LTAHSMSDDR AKAMSVFIGG RALGLILGPG LQLIFLFLGD TGLQLIGPLH 180
  181 IHSHNAAAFI SIVLNISAIV ALFTVYHEIE RNGNSCSQRS VVSVFFHFHE KSLQEDDENW 240
  241 PRPDKLAMFV CMLTRYCQNF TYYAIETLAP AFMMMMFNME RDSAVGTMSI IFFIAGVFAL 300
  301 SLYSTFVFTD VARKLNIGKV NTISLIIFII YVLTTYQWPY IPTNVVVNTD GTHGGCDYSL 360
  361 YSWCLGLPKT SQAFFYIGYI IAFGGCVPFI NVGDATLYSK LFNPVGQALE QSLYDVSQVF 420
  421 ARVVAPVLCT AIYASFGPQR VWELLFAQLV VVTALWIAFA HRMIPLRPKP RPVFYLE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.045757
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle