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View Structure Prediction Details

Protein: tsfm-1
Organism: Caenorhabditis elegans
Length: 316 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tsfm-1.

Description E-value Query
Range
Subject
Range
gi|25299529 - gi|25299529|pir||F97526 elongation factor TS (ef-ts) [imported] - Agrobacterium tumefaciens (strain ...
gi|15156441, gi|... - gi|15888701|ref|NP_354382.1| elongation factor Ts [Agrobacterium tumefaciens str. C58], gi|15156441|...
303.0 [0..2] [315..54]

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Predicted Domain #1
Region A:
Residues: [1-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFARAPFVRL LSTTSRNLAE AEKKVSKEAL MALRKKTGYS YVNCRKALIQ FGENDMDSAV  60
   61 KWLKEAAAKE GWAKAAKLGT RVTSNGLVSV VTDNSTAAVV ELSCETDFVA RSGAFKDLLS 120
  121 NISNSVLAKA KPQSISSGSK LQEFTYDLGD LTDSDGKNMR EVLSLSIGKL GENMTVRRVK 180
  181 AFKAPEGTTL FGASHPKDGT DDIPMGRFIS LIALNQSSPG SISSQQLAGQ ICQHIIGMSP 240
  241 ESLGEAAESV KTQEGLRSQE GHDPNADPVV VTNIDESETA LLRQAFMLNP SQSVHEYLKS 300
  301 HNANILDFVR VELGSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.0
Match: 1xb2B
Description: Crystal Structure of Bos taurus mitochondrial Elongation Factor Tu/Ts Complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle