YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7504062
Organism:	Caenorhabditis elegans
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7504062.

Description	E-value	Query Range	Subject Range
CG9396-PA - This gene is referred to in FlyBase by the symbol Dmel\CG9396 (CG9396, FBgn0037714). It is a protein...	193.0	[0..2]	[135..20]
gi\|125777326, gi... - gi\|54639317\|gb\|EAL28719.1\| GA14151-PA [Drosophila pseudoobscura], gi\|125777326\|ref\|XP_001359570.1\| G...	192.0	[0..1]	[128..18]
CE28447 - status:Confirmed UniProt:O01578 protein_id:AAB52430.2	182.0	[0..1]	[128..1]
gi\|187029849, gi... - gi\|39586262\|emb\|CAE66673.1\| Hypothetical protein CBG12012 [Caenorhabditis briggsae], gi\|187029849\|em...	180.0	[0..1]	[128..1]
gi\|62859799, gi\|... - gi\|62859799\|ref\|NP_001016695.1\| brain protein 44 [Xenopus (Silurana) tropicalis], gi\|169642463\|gb\|AA...	176.0	[0..4]	[132..7]
gi\|47938856, gi\|... - gi\|47938856\|gb\|AAH71315.1\| Brp44 protein [Danio rerio], gi\|169154836\|emb\|CAQ13558.1\| (novel protein,...	173.0	[0..4]	[126..6]
gi\|27882199, gi\|... - gi\|27882199\|gb\|AAH44023.1\| MGC53394 protein [Xenopus laevis], gi\|148236211\|ref\|NP_001079531.1\| hypot...	173.0	[0..4]	[131..7]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPHRLLYQA LCKAGDKFVY PVLPAFAKPA WNHAAGPKTV FFWAPTIKWT LIGAGLADLA  60
   61 RPADKLSLYQ NSALFATGAI WTRYCLVITP INYYLSSVNF FVMCTGLAQL CRIAHYRIEE 120
  121 TPEFHQNEHA TEIDAQNLNL FPLFT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	69.309804
Match:	PF03650.4
Description:	No description for PF03650.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.908	N/A	N/A	a.24.9	alpha-catenin/vinculin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits