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View Structure Prediction Details

Protein: swan-1
Organism: Caenorhabditis elegans
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for swan-1.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
388.0 [0..1] [388..1327]

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Predicted Domain #1
Region A:
Residues: [1-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATNGHAVNG EAHVMQQVAQ QPAPPGPLAP QGIGRQNEIV IGGRDRRCEI YKFTSDQQLY  60
   61 ASAWSNKNDI KFRLAVGTVS DVSVNPCAAN KVSIVQLKDE TGELVETASF PMEFPANAVG 120
  121 FIPDPDNVYP DLIATTSDCL RLWRVVDGKV HPDAVMINNT NSQYGSALTS FDWNELEPRY 180
  181 IGVSSVDTTC TIYDVEVGCA IGQTKPTAPF TLKTQLIAHD KPVHDIEFAK INGGRDHFAT 240
  241 VGADGSARMF DLRHLNHSTI VYEDPNKEKL QRLSWNKQEP YFMALFAENS QEVQILDIRM 300
  301 PCNILCRLRN HTGPVNGIAW APHSPHHICT AGDDSQALIW DLQQVPRPVD DPILAYSAGG 360
  361 EVNQIHWGPV HSNWIAICFN KTLEILRV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.522879
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle