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View Structure Prediction Details

Protein: atg-18
Organism: Caenorhabditis elegans
Length: 412 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atg-18.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
453.0 [0..1] [411..1163]

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Predicted Domain #1
Region A:
Residues: [1-412]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATTSEENP DSINYIGFNQ DSKVICVGHK DGYMFYKTAD ILENNTLTYE GENLTHLGLN  60
   61 NCLIIERLFS SALMVVISQK DPRVLHVYHF TSRNIICDHR FNKSVLTVRL NRDRIVVCLE 120
  121 DCIYIYNLKD MKMMHNIMDT PTNKLGVLDL TSNPGNALIA YPGSTDTGSV HLFDAINLSS 180
  181 VSTFNAHEGT IACLKFNQEG NMIATASTKG TVIRVYSVPN GHRLFEFRRG VTRCVNIYSL 240
  241 CFSSDSKYLT SSSNTETVHV FKLEKTEGVD NKPEASTEGG GWFDAINKTF SAYMPSQVLQ 300
  301 VGELMTTERS FATAKLPGAA RSNQVSLVSH KNQQYVMAAT SDGFVYAYRL DPEGGELDLI 360
  361 KQHNIGPKSD TSRASPTSTG SGGAAKSAEA SNQSVPNMDD PDDFPPMSHT SG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.69897
Match: 2ovpB
Description: No description for 2ovpB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle