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View Structure Prediction Details

Protein: grd-5
Organism: Caenorhabditis elegans
Length: 102 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for grd-5.

Description E-value Query
Range
Subject
Range
gi|157760183 - gi|157760183|ref|XP_001672434.1| Hypothetical protein CBG01473 [Caenorhabditis briggsae AF16]
gi|187038201, gi... - gi|39581567|emb|CAE58352.1| Hypothetical protein CBG01473 [Caenorhabditis briggsae], gi|187038201|em...
144.0 [0..1] [102..1]
grd-10 - status:Confirmed UniProt:O44471 protein_id:AAB92033.1
140.0 [0..1] [102..1]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLIVLAAL AVTVCFAQDN CYINDSGFTC CNKELESAMK GAMGGDDLLG SADSIQKGAE  60
   61 GSLGGKFETV VALDDFAYKS HFKEGKSCKI EKNGQYALAW QP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.173925
Match: PF04155.9
Description: No description for PF04155.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.827 N/A N/A d.39.1 Dynein light chain 8 (DLC8)


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle