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View Structure Prediction Details

Protein: CE10064
Organism: Caenorhabditis elegans
Length: 501 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10064.

Description E-value Query
Range
Subject
Range
gi|18450371, gi|... - gi|35786|emb|CAA38065.1| protein-tyrosine phosphatase [Homo sapiens], gi|33096774|emb|CAE11878.1| hy...
gi|123995317, gi... - gi|123995317|gb|ABM85260.1| protein tyrosine phosphatase, receptor type, A [synthetic construct], gi...
369.0 [0..8] [500..37]

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Predicted Domain #1
Region A:
Residues: [1-501]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDANGPIVKH NVPQTPQTPT PHKKKHAKHH GGKHHRKSRS GKKKTGFLCC RGKKRRKSRK  60
   61 GHGKSKSTAH KQPRSKVVKP LPPVVNEQLG DVVLVKNLER SKSFPIQQLP GAPQSPNKVT 120
  121 PSKASKETDK DDKLQKSKSK TKLDEKSDNN KDIKDEKKDD KKEGKKEEKK DEKKDDDGNT 180
  181 EEKKQKWLGL AKRFVDEDAN IAANDFEQVV SYIPPSVTKH QFVKNMHKNR FADVICLDHS 240
  241 KVHLSDSSYI HASYLELDTQ KRAILTQLPL PHTSADFWQM IIEQRVKCVL LLLTDSEYDS 300
  301 LGGDFVFPRN QDFLNFEERS IRVGEFKRVE IMDGWVLKVV SVSNGDYKSF LHIHHYNAWP 360
  361 HNNIPGNGSP KFVKQIWQLQ SVLRKYSPST PTVYMSLSGC GRAGTFALFE TAHLSLHSEQ 420
  421 ATLDLVKCLE MVRNGRIHAC QNLTQFSFVY TLLAEHILDN GFCKLAIPKK PNDEKDKEKD 480
  481 KENEDEINVQ MILRQLVINK C

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.39794
Match: 2b3oA
Description: Crystal structure of human tyrosine phosphatase SHP-1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle