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View Structure Prediction Details

Protein: atp-3
Organism: Caenorhabditis elegans
Length: 207 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp-3.

Description E-value Query
Range		 Subject
Range
gi|57108786 - gi|57108786|ref|XP_535587.1| PREDICTED: similar to ATP synthase O subunit, mitochondrial precursor (...
 206.0 [0..7] [205..14]
gi|109065448 - gi|109065448|ref|XP_001090216.1| PREDICTED: ATP synthase, H+ transporting, mitochondrial F1 complex,...
 206.0 [0..7] [207..14]
ATPO_PONPY - ATP synthase subunit O, mitochondrial precursor - Pongo pygmaeus (Orangutan)
ATPO_PONAB - ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1
 205.0 [0..7] [206..14]
ATPO_PIG - ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1
 204.0 [0..7] [205..14]
ATP5O - ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
gi|55655775 - gi|55655775|ref|XP_531443.1| PREDICTED: mitochondrial ATP synthase, O subunit [Pan troglodytes]
 203.0 [0..7] [207..14]
gi|61365630, gi|... - gi|61365630|gb|AAX42738.1| ATP synthase H+ transporting mitochondrial F1 complex O subunit [syntheti...
 203.0 [0..7] [207..14]
ATPO_BOVIN - ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2
 203.0 [0..7] [207..14]

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Predicted Domain #1
Region A:
Residues: [1-130] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQLMKRGFS TSAALAKAQL VKTPIQVHGV EGRYAAALYS AGHKQNKLDQ ISTDLNNVRS  60
   61 VYKDNKKFQE FVLDPTLKAN KKKTAIEAIS TKLGLTKETG NFLGLLAENG RLNKLESVVS 120
  121 SFESIMRAHR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.39794
Match: 2bo5A
Description: Bovine oligomycin sensitivity conferral protein N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [131-207] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GELFVQVTSA EELSSSNQKA LSDALSKIGK SGQKLTVTYA VKPSILGGLV VTIGDKYVDL  60
   61 SIASRVKKYK DALATAI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.981
Match: 2dm9A
Description: No description for 2dm9A was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle