YRC Public Data Repository - Protein Structure Prediction

Protein:	CE09696
Organism:	Caenorhabditis elegans
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09696.

Description	E-value	Query Range	Subject Range
gi\|37930463 - gi\|37930463\|gb\|AAP69867.1\| glutathione peroxidase 1 [Lotus japonicus]	177.0	[0..2]	[160..77]
gi\|48374968, gi\|... - gi\|48374968\|gb\|AAT42166.1\| putative glutathione peroxidase [Sorghum bicolor], gi\|242073970\|ref\|XP_00...	177.0	[0..2]	[160..8]
RPA3627 - RPA3627 putative glutathione peroxidase 4089161:4089637 reverse MW:17177	177.0	[0..1]	[159..1]
gi\|6179600 - gi\|6179600\|emb\|CAB59893.1\| GPX12Hv, glutathione peroxidase-like protein [Hordeum vulgare subsp. vulg...	177.0	[0..4]	[160..79]
gi\|21360380 - gi\|21360380\|gb\|AAM47493.1\| glutathione peroxidase 1 [Oryza sativa] gi\|115459848, gi... - gi\|222629338\|gb\|EEE61470.1\| hypothetical protein OsJ_15735 [Oryza sativa Japonica Group], gi\|2156930...	176.0	[0..2]	[160..8]
gi\|44663004 - gi\|44663004\|gb\|AAS47590.1\| phospholipid-hydroperoxide glutathione peroxidase [Setaria italica]	176.0	[0..2]	[160..8]
GPX6_ARATH - Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana ...	175.0	[0..3]	[160..72]
gi\|92894223 - gi\|92894223\|gb\|ABE92133.1\| Glutathione peroxidase [Medicago truncatula]	175.0	[0..3]	[159..111]
gi\|194703274, gi... - gi\|48374955\|gb\|AAT42154.1\| putative glutathione peroxidase [Zea mays], gi\|226501294\|ref\|NP_001141210...	175.0	[0..2]	[160..8]
gi\|46319251, gi\|... - gi\|67549094\|ref\|ZP_00426968.1\| Glutathione peroxidase [Burkholderia vietnamiensis G4], gi\|67529600\|g...	175.0	[0..1]	[159..1]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVYDFNVK NANGDDVSLS DYKGKVLIIV NVASQCGLTN KNYTQLKELL DVYKKDGLEV  60
   61 LAFPCNQFAG QEPSCEIDIQ AFVADKFKFE PTLFQKIDVN GDKQSPLFKF LKNEKGGFMF 120
  121 DAIKWNFTKF LVGRDGKIIK RFGPTTDPKD MEKDIKEALG EKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	2p5qA
Description:	No description for 2p5qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits