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View Structure Prediction Details

Protein: flp-1
Organism: Caenorhabditis elegans
Length: 175 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for flp-1.

Description E-value Query
Range
Subject
Range
gi|902368|gb|AAA... - CV-FLP-1B
gi|902368 - gi|902368|gb|AAA74036.1| CV-FLP-1B
177.0 [0..13] [175..13]
gi|157755301 - gi|157755301|ref|XP_001669994.1| Hypothetical protein CBG21782 [Caenorhabditis briggsae AF16]
gi|187022347, gi... - gi|39586460|emb|CAE74119.1| Hypothetical protein CBG21782 [Caenorhabditis briggsae], gi|187022347|em...
174.0 [0..13] [175..13]
flp-1 - status:Confirmed UniProt:P41855 protein_id:CAD56243.1
168.0 [0..13] [175..13]
gi|27657932 - gi|27657932|gb|AAO18224.1| FMRFamide-like prepropeptide [Oesophagostomum dentatum]
130.0 [0..15] [156..15]
FARP_ASCSU - FMRFamide-like neuropeptides OS=Ascaris suum GN=AFP-1 PE=1 SV=1
114.0 [0..1] [175..1]
gi|482621 - gi|482621|pir||A60918 FMRFamide precursor - fruit fly (Drosophila virilis)
109.0 [0..23] [175..106]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLYQVGLL LLVAATYKVS AECCTPGATS DFCTVFSMLS TMEQNEVMNF IGENCDGDAE  60
   61 VALQKMEKRK PNFMRYGRSA AVKSLGKKAG SDPNFLRFGR SQPNFLRFGK ASGDPNFLRF 120
  121 GRSDPNFLRF GKAAADPNFL RFGKRSADPN FLRFGRSFDN FDRESRKPNF LRFGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle