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View Structure Prediction Details

Protein: CE09545
Organism: Caenorhabditis elegans
Length: 530 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09545.

Description E-value Query
Range
Subject
Range
gi|91089229 - gi|91089229|ref|XP_968302.1| PREDICTED: similar to CG5304-PA [Tribolium castaneum]
324.0 [0..19] [525..574]

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Predicted Domain #1
Region A:
Residues: [1-530]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELCTDDAFP EKQHHPFLHI RSRRLHVVLM LMYAFFCMCQ MTAHIGLSLS CMCNSTAVAL  60
   61 MNTNNATLVE GTESTILMSI LENKTSESQE LGGGDDGESC TKLEGKVIKD YGGTFIWSVS 120
  121 WQGYIVSAAF LGGFIFSYPA GVLVDRFSAR HILSVAILML TIASLLMPVL SIYIGEKGAF 180
  181 AGRFVMGISE TMLIPSINSM VTKWIPINEK SLAASVFTAG NQLSGMFGNI LVAELCASSF 240
  241 GWSSIFYSAS LFGISWLVLW HLTVRNSPHN TRWIHKRELD YLANNIPPKH PSSVVKKTPW 300
  301 RDMLTSKVFW SLMFNSVMGN MMIALIFVYI PVYFKDVLML DVQSNGFYSA IPHISNLIAK 360
  361 LIWGYLMDKM RHKKILSPSA TVKLSQFASM MGISVSCFFL RYMNCATPFY ALVLLSSVSA 420
  421 FFGLSISGFY TSLLSIAPSH IGTLTSLATV IGFVGRMFTP LMISYYKTVG TAEEWGHVLL 480
  481 IYVFASATGG IIFLLFGSGD VQNWDYSKRH NTARPNALVA PKSDKDLEDF 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.522879
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle