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View Structure Prediction Details

Protein: grd-12
Organism: Caenorhabditis elegans
Length: 285 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for grd-12.

Description E-value Query
Range
Subject
Range
gi|7510552 - gi|7510552|pir||T27466 hypothetical protein Y87G2A.n - Caenorhabditis elegans
181.0 [0..77] [270..32]
gi|157764952 - gi|157764952|ref|XP_001674819.1| Hypothetical protein CBG11599 [Caenorhabditis briggsae AF16]
gi|187030203, gi... - gi|39583373|emb|CAE66347.1| Hypothetical protein CBG11599 [Caenorhabditis briggsae], gi|187030203|em...
178.0 [0..41] [284..32]
gi|54657094 - gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu...
gi|67597591 - gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...
158.0 [0..6] [180..1676]
gi|3511287, gi|7... - pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...
149.0 [0..5] [160..1484]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHRPKLTVI LSVLLTFRLA DCWFLSMLGG GAGGCQNQCP PAYSGYYQSR NYNPPQQRFN  60
   61 YGLPPPTPPA NSYATAPANY AAPSNAYPFA PQYSIPMNSY AMPKYAVAPQ YAMVPYPTPP 120
  121 AYVRPPPVYV TPPPVYITPP PTTTTTIPPP KC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [153-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FQNTQGYKCC NRQLDQFLEQ KVGEMLKPEW QRCNLQRFAT QLQHETQQMF NHSMEAIVAS  60
   61 GEVQNLSNYR GDLYCKKRSR DGKIVVIYGS AVPYSLDTGV TRPMNDDELR TQMYPAKYDE 120
  121 IGVHDGHEEN IWF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 22.161151
Match: PF04155.9
Description: No description for PF04155.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle