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View Structure Prediction Details

Protein: wdr-23
Organism: Caenorhabditis elegans
Length: 571 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for wdr-23.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
590.0 [0..2] [571..1184]

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Predicted Domain #1
Region A:
Residues: [1-427]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNWITSTFL RFDLFQRHQP NRFLEYTRVQ HSNQSPAYSV RTAAEIVAHQ RMKPNHSNDS  60
   61 DTDFSSDDEG CPKMTPHEEQ QMFEREQHIA FSGRCHIGDP ESCTQLRNEI NSRCGPRPST 120
  121 SNNMEFILNR DLQKRGTSIS NPRTVARVLN SHLPNQKRRV DRVATKSFCT QYIQNGTKIV 180
  181 VASQDEKIRF YQRNPDKSKY RSKYMKSDEL RVDQCGWSIL DTAISLNGDL IAYGTWKDAV 240
  241 FVGKLDFTER QNITWFPIDL NGEPGRDHCA VFCVKFSDSS EQIVCGTSQY SIHVFDVEQR 300
  301 RRIRTIVNAH EDDVNSVCFA DLGSNLIYSA GDDGLVKVWD KRAWSDGDVE PVGVFAGHRD 360
  361 GVTHVDSRQD ERYLLSNSKD QTIKVWDLRK FSNMSGVEAT RACVQSQHWD YRWQPAPPGL 420
  421 CQPVAGD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 59.39794
Match: 2ovpB
Description: No description for 2ovpB was found.

Predicted Domain #2
Region A:
Residues: [428-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSVMTLRGHS VLHTLVRANF SPESTGRRYI YTGCARGEVV VYDIMSGTVS RRLKGHTAVV  60
   61 RECDWHPTEN EIVSSAWDGV TTVWTWDERQ EGVIAPYDHP NISQFGDEDS CDELFQPVKK 120
  121 QCRRQRKTMS SRGHPCSSSS ISQN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.045757
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle