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View Structure Prediction Details

Protein: CE08963
Organism: Caenorhabditis elegans
Length: 385 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08963.

Description E-value Query
Range
Subject
Range
CE39907 - status:Confirmed UniProt:O01826 protein_id:AAK68267.2
232.0 [0..1] [385..170]

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Predicted Domain #1
Region A:
Residues: [1-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRELWRVVE KSDIIVQIVD ARNPLLFRSK DLDDYVKEVD PAKQILLLVN KADLLKPEQQ  60
   61 ASWREYFEKE NIKVIFWSAI DEVLDPIDED AVETSNPSTS THMFVTNKDE LIAKFKELGH 120
  121 VSDEPSAKPV MVGMVGYPNV GKSSTINKLA GGKKVSVSAT PGKTRHFQTI HIDSQLCLCD 180
  181 CPGLVMPSFS FGRSEMFLNG ILPVDQMRDH FGPTSLLLSR VPVHVIEATY SIMLPEMQSP 240
  241 SAINLLNSLA FMRGFMASSG IPDCSRAARL MFKDVVSGKL IWAAAP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.39794
Match: 2hjgA
Description: No description for 2hjgA was found.

Predicted Domain #2
Region A:
Residues: [287-385]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGVEQEEFDR ISYPDKKTRD IGRVQMEKLA KLQLLEGDEL KGSQFDSQHF VGSIGVAHVR  60
   61 DSKALPQTLG TVIPTAPTEN NGKKHYKGKK DKLRRIYNE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.154902
Match: 1egaA
Description: GTPase Era, N-terminal domain; GTPase Era C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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