YRC Public Data Repository - Protein Structure Prediction

Protein:	CE08570
Organism:	Caenorhabditis elegans
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08570.

Description	E-value	Query Range	Subject Range
DMRT1_ORYLA - Doublesex- and mab-3-related transcription factor 1 OS=Oryzias latipes GN=dmrt1 PE=2 SV=1	133.0	[0..17]	[98..1]
gi\|32483421 - gi\|32483421\|gb\|AAP84972.1\| DMRT 1 [Acanthopagrus schlegelii]	133.0	[0..7]	[98..5]
gi\|23428500 - gi\|23428500\|gb\|AAL18252.1\| DMRT1 form ST1 [Acipenser transmontanus]	132.0	[0..24]	[98..15]
gi\|30088779 - gi\|30088779\|gb\|AAO63771.1\| putative zinc finger transcription factor [Oryzias celebensis]	132.0	[0..21]	[98..7]
gi\|32364762 - gi\|32364762\|gb\|AAP80400.1\|AF421349_1 doublesex and mab-3 related transcription factor 1c; isoform Dm...	132.0	[0..7]	[99..5]
DMRT3 - doublesex and mab-3 related transcription factor 3	132.0	[0..20]	[111..4]
gi\|54303684 - gi\|54303684\|gb\|AAP84606.3\| DMRT1 transcription factor [Odontesthes bonariensis]	131.0	[0..7]	[98..5]
gi\|46393832 - gi\|46393832\|gb\|AAS91466.1\| putative zinc finger transcription factor DMRT1 [Oryzias marmoratus]	131.0	[0..21]	[98..7]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVADVLRQSV LVPISMYPQY PVPRRYTTSV FKEYQKKKKI YYCQRCLNHD VPRPRKNHKC  60
   61 ECPYADCTCE KCGLVEKRRI LNIRLQNYNQ FNIENENDSK LIIVEDDDKK KQGG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.49
Match:	1lpvA
Description:	DM domain of Doublesex (dsx)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits