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View Structure Prediction Details

Protein: CE08188
Organism: Caenorhabditis elegans
Length: 221 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08188.

Description E-value Query
Range
Subject
Range
gi|25395804 - gi|25395804|pir||F88481 protein C16A3.1 [imported] - Caenorhabditis elegans
178.0 [0..1] [216..1]

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Predicted Domain #1
Region A:
Residues: [1-221]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEAETGEPN GFRSCYDKLR KAVGNIPMDA SKSTKLHNLS SRKISEILPN LYLSGRTVSQ  60
   61 NSELLKEKNI TTVINVSDRE VVNYKNNQKF IKNYRFYAMS DTASAKFDGI IEEAVRIIHD 120
  121 SRSKEEGVLV HCFLGVSRSA TLVAFYLISA LSINWRDAVD FIHHRRFSAN PNFGFLHQLK 180
  181 VYSTTKAKEF RNQLISERCL RMRESDKDII KKYLPLAVFE L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.154902
Match: 1wrmA
Description: Crystal structure of JSP-1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle