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View Structure Prediction Details

Protein: fbxa-165
Organism: Caenorhabditis elegans
Length: 431 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fbxa-165.

Description E-value Query
Range
Subject
Range
fbxa-158 - status:Partially_confirmed
270.0 [0..1] [389..1]

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Predicted Domain #1
Region A:
Residues: [1-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVLGENEL VIRGCILYEV LNKKPIQESY ENFCRNVGND VMSYNDFDFW FYRFYNGNHD  60
   61 LHYDRSADPA SPLLSNMPLN IIDEVLNRME ILNLLVLMKV SRNFRKVVQN MKMVFDCIEV 120
  121 DFDEHLAITY NSRHKIKYRP NDTAQYSPFR QEPTCTCGRR IRTSDEDNRK EFFVTDEDYI 180
  181 ELGVKDLKLI MENQNVQLKK FQFSNGSNQD TQKKFIDRAE IAFKSAKSST RTVEAHYNSL 240
  241 AEIAQLLPIF HAGKLEEINF KQGARTDGYE QLVGLEQWKN ARKFDGFWSL NVPIEHCLHF 300
  301 ECFKDHFVRF KEEDAMKLRY MLDRSTNFGY AEITIDPMNV SLLKRAFDV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.07
Match: 1fs2A
Description: Skp2; Cyclin A/CDK2-associated p19, Skp2
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [350-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNDNKFEFVY QSPDNGSFEV HCALRVLYIT KSGYKFKYNN KSASTFYKPP PIPAPPALFL  60
   61 RDYQFFDPRP RMPTDRSRYR PF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle