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View Structure Prediction Details

Protein: CE07953
Organism: Caenorhabditis elegans
Length: 691 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07953.

Description E-value Query
Range
Subject
Range
CE06669 - WBGene00014113 status:Partially_confirmed TR:Q23647 protein_id:CAA94860.1
459.0 [0..3] [527..2]

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Predicted Domain #1
Region A:
Residues: [1-232]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEKQQWDD AYCLAEEMHD AGRPFKREEL NIADQFICSR FSTIFEYDPY KDTYGFRNQE  60
   61 LTHAIPVKSK CRHISDVDIL ELKKNTANAD IRFPSYLNIC PVYAMHPFTV LAFDLSKPVP 120
  121 MGMNASMENA APNMKSPTEA EITPGTIYIF KHRDNKCYRC VILFEDGDNN VSDADRKYMV 180
  181 AFLDTPQVVS VKLKTLFHLG KFTIESYPCA LYCCRAVGIL EIRKDFGADL NG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [233-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QINEFYKDKV KRKSGVHALI YKKDDRGDKL IFDCPSILGT SMTMALEIKD VIGHRSVAEN  60
   61 DPTALSYDEL VSKQLPTVDI DDHNSSVVLD LEESVIAQEL GSTNGADCPC NNDNIDDFMQ 120
  121 SQRQNPLDNN RDNWDRINES RSSMQSFAIN QSQA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [387-613]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITANPTPQPT FDESSGEVQT IPESINNLAL NGRYLEDGRG TEEIREERSV ESRQIGNQVV  60
   61 SQASCNYLEA RQNSTQTANA ESVCAIISES HAALPTDIQV IPSQHVLNEN NHTVLPSVAP 120
  121 IIRNATGHSH IFGRQIPSPA FRRESLSSGN SIQVATFAAT TGPCGSNTSR PTAQNTANSS 180
  181 INQDMSISNS STNARLITIA QDNLNDTENW PNSEREQSAT EMESGAE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [614-691]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATTNSAVDEF AQVSDDMKGL ADSMINFLRL TANSNNQDAF KANIFAMELI STKIPNQLTK  60
   61 RFFTLKIAEA KSLAEGFN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle