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View Structure Prediction Details

Protein: erm-1
Organism: Caenorhabditis elegans
Length: 564 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for erm-1.

Description E-value Query
Range
Subject
Range
gi|114640250 - gi|114640250|ref|XP_522176.2| PREDICTED: radixin [Pan troglodytes]
403.0 [0..6] [564..186]

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Predicted Domain #1
Region A:
Residues: [1-564]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAAGDINVR VTSMDSELEF AIQSSTTGKQ LFDQVVKTIG LREIWYFGLQ YTDNKGFPTW  60
   61 LKLNKKVLSQ DVKKDPTLVF KFRAKFYPED VAEEIIQDVT MRLFYLQVKD GILSDEIYCP 120
  121 PETSVLLASY AMQAKYGDYV PETHVAGCLT ADRLLPQRVL GQFKLNSEEW ERRIMTWWAD 180
  181 HRATTREQAM LEYLKIAQDL EMYGVNYFEI RNKKGTDLYL GVDALGLNIY DKADRLSPKV 240
  241 GFPWSEIRNI SFNDKKFVIK PIDKKAHDFV FYAPRLRINK RILALCMGNH ELYMRRRKPD 300
  301 TIEVQQMKQQ AREDRALKIA EQEKLTREMS AREEAEQRQR DAEKRMAQMQ EDMERARLEL 360
  361 AEAHNTIHSL EAQLKQLQLA KQALEQKEYE LRELTAQLQS EKAMSDGERR HLRDQVDARE 420
  421 REVFSMREEV ERQTTVTRQL QTQIHSQQHT QHYSNSHHVS NGHAHDETAT DDEDNGATEL 480
  481 TNDADQNVPQ HELERVTAAE KNIQIKNKLD MLTRELDSVK DQNAVTDYDV LHMENKKAGR 540
  541 DKYKTLRQIR GGNTKRRIDQ YENM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 89.30103
Match: 2i1jA
Description: No description for 2i1jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle