YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE07643
Organism: Caenorhabditis elegans
Length: 349 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07643.

Description E-value Query
Range
Subject
Range
gi|47214889 - gi|47214889|emb|CAG01020.1| unnamed protein product [Tetraodon nigroviridis]
308.0 [0..28] [349..37]

Back

Predicted Domain #1
Region A:
Residues: [1-260]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRVFKKKGG AKREAEEEKQ EELVMRKKLR KEEEPEPVED VEEDEDVSDE DDEDIDDEEE  60
   61 DEDEQNIMDF DFEAYPPSED DRDGIVNMLT QTFLRTDIDL KAMSEGIIAK APHGVVLTQA 120
  121 YDDEETEEDY MAYGLCTTVP LNDNKDDAPK FIKDLFTYVL NRAKKGAPTE IYKKIEEIQV 180
  181 SGDGKSALFV NERLLNFPTI VVPQIFGSIR EDLSGFETKY KTIIYIQKLR IVETDGSEAK 240
  241 VGASSNGSSG VAGKKKGKMG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [261-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAEKKRAAAA ALANAEIEFD NPEDRVLFEI KEGKEIHFDY PVHMDVEPGS KFHSTEKDGK  60
   61 KWNPFRRLVI MDDKRFDAFL KKGSDGIII

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle