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View Structure Prediction Details

Protein: pgl-1
Organism: Caenorhabditis elegans
Length: 771 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pgl-1.

Description E-value Query
Range
Subject
Range
pgl-1 - status:Confirmed UniProt:Q9TZQ3 protein_id:AAG00057.1
891.0 [0..42] [711..1]

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Predicted Domain #1
Region A:
Residues: [1-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVSDLRVSK RTTRRERGSC NFDLVPIFFS VFLLFWFHPF HMEANKREIV DFGGLRSYFF  60
   61 PNLAHYITKN DEELFNNTSQ ANKLAAFVLG ASKDAPGDED ILEMILPNDA NAAVIAAGMD 120
  121 VCLLLGDKFR PKFDAAAEKL SGLGHAHDLV SVIDDDKKLG MLARKAKLKK TEDAKILQAL 180
  181 LKVIAIDDAA EKFVELTELV SQLDLDFDVY VLTKILGLIS EETSDEVDII RDNVVNAFDS 240
  241 CKPLLKQLML DGPK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [255-487]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEPADPFISL LMDPLEESVG KVVNHIAQLF EEASKNEGDE SLVLRSQLGY QLFFLIVRSL  60
   61 ADGKREVSKK ILSGIPTSVR AEVFPGLQRS VYKSAVFLGN HIIQVLLGSK KSFEDWDVVG 120
  121 VAKDLESAWK RRAIAELIKK FQVSILEQCF DKPVPLIPQS PLNNDAVIDN VNKALQFALW 180
  181 LTEFYGSENE TEALGELRFL DSTSKNLLVD SFKKFVQGIN SKTHVTRIVE SLE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [488-694]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KCCLSDTPSG RKSNVQPSTS QQQDSAYTKE EMTTVHNTYS VNTKAQVLNG LSDTNSSGLL  60
   61 VDSKDSLSLQ EISCDEVDSS TLLSSSRNIG EGVTVKAVDP VPEKVNDAQQ QQTVNEIEMA 120
  121 SDANQDTSSS ASPEVAPSFS TDGWDSPTKS VALPPGMQQI DEEETTVADK DSTPQPQARA 180
  181 ETAWGSGDAT PMPLPAPTNQ YKVSGFG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [695-771]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAKVAKGFGQ FAPTSSAYGG GGGRGGYGGG DRGGRGGYGG DRGGRGGYGG GDRGGRGGYG  60
   61 GDRGRGGYGG RGGRGGF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle