YRC Public Data Repository - Protein Structure Prediction

Protein:	ndx-3
Organism:	Caenorhabditis elegans
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ndx-3.

Description	E-value	Query Range	Subject Range
gi\|39596785, gi\|... - gi\|39596785\|emb\|CAE59012.1\| Hypothetical protein CBG02288 [Caenorhabditis briggsae], gi\|187037537\|em... gi\|157752332 - gi\|157752332\|ref\|XP_001679878.1\| Hypothetical protein CBG02288 [Caenorhabditis briggsae AF16]	156.0	[0..1]	[188..60]
gi\|25399577 - pir\|\|F87299 MutT/nudix family protein [imported] - Caulobacter crescentus gi\|13421568, gi\|... - gi\|16124662\|ref\|NP_419226.1\| MutT/nudix family protein [Caulobacter crescentus CB15], gi\|13421568\|gb... gi\|220962523, gi... - gi\|221233351\|ref\|YP_002515787.1\| CoA pyrophosphatase [Caulobacter crescentus NA1000], gi\|220962523\|g...	123.0	[0..2]	[178..50]
gi\|114569278, gi... - gi\|114569278\|ref\|YP_755958.1\| NUDIX hydrolase [Maricaulis maris MCS10], gi\|114339740\|gb\|ABI65020.1\| ...	119.0	[0..2]	[176..52]
gi\|167644662, gi... - gi\|167644662\|ref\|YP_001682325.1\| NUDIX hydrolase [Caulobacter sp. K31], gi\|167347092\|gb\|ABZ69827.1\| ...	118.0	[0..2]	[177..51]
gi\|158140573, gi... - gi\|158320374\|ref\|YP_001512881.1\| NUDIX hydrolase [Alkaliphilus oremlandii OhILAs], gi\|158140573\|gb\|A...	114.0	[0..2]	[174..26]
gi\|110802318, gi... - gi\|110802318\|ref\|YP_698189.1\| MutT/NUDIX NTP pyrophosphatase [Clostridium perfringens SM101], gi\|110...	114.0	[0..2]	[176..28]
gi\|88862120, gi\|... - gi\|89052571\|ref\|YP_508022.1\| NUDIX hydrolase [Jannaschia sp. CCS1], gi\|88862120\|gb\|ABD52997.1\| NUDIX...	114.0	[0..2]	[174..43]
gi\|110799213, gi... - gi\|110799213\|ref\|YP_695331.1\| MutT/NUDIX NTP pyrophosphatase [Clostridium perfringens ATCC 13124], g...	113.0	[0..2]	[176..28]
gi\|33566068 - gi\|33566068\|emb\|CAE36967.1\| conserved hypothetical protein [Bordetella parapertussis] gi\|33596299 - gi\|33596299\|ref\|NP_883942.1\| hypothetical protein BPP1666 [Bordetella parapertussis 12822]	111.0	[0..2]	[176..95]
gi\|33576854, gi\|... - gi\|33602415\|ref\|NP_889975.1\| hypothetical protein BB3442 [Bordetella bronchiseptica RB50], gi\|335768...	111.0	[0..2]	[176..78]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVLIPLVTV DGRDSVLLTK RSIHLRSHRG EVCFPGGRMD PGETTTETAL RETFEEIGVN  60
   61 AESVEIWGHL KSVIRRQADF NVTPIVGYIS DERVLENLVV NSDEVQAVFT IPIDELIKKA 120
  121 GLTKFQSKRM KYTLPSFDST EFKVHHNAPN EYLHSTQRVW GLSGVMLHQA LTLLNPDVYK 180
  181 HDLIVKFF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.154902
Match:	1nqyA
Description:	Coenzyme A pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	0.129841789981243	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: