YRC Public Data Repository - Protein Structure Prediction

Protein:	prl-1
Organism:	Caenorhabditis elegans
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prl-1.

Description	E-value	Query Range	Subject Range
gi\|542150125\|ref... - PREDICTED: protein tyrosine phosphatase type IVA 1 isoform X2 [Zonotrichia albicollis], PREDICTED: p... gi\|224048583 - gi\|224048583\|ref\|XP_002193977.1\| PREDICTED: protein tyrosine phosphatase type IVA, member 1 [Taeniop... gi\|56605916, gi\|... - gi\|56605916\|ref\|NP_001008461.1\| protein tyrosine phosphatase type IVA, member 1 [Gallus gallus], gi\|...	163.0	[0..16]	[190..1]
gi\|60654551 - gi\|60654551\|gb\|AAX29966.1\| protein tyrosine phosphatase type IVA member 1 [synthetic construct]	162.0	[0..16]	[190..1]
TP4A1_MOUSE - Protein tyrosine phosphatase type IVA 1 OS=Mus musculus GN=Ptp4a1 PE=1 SV=1 ENSOCUP000000054... - pep:novel chromosome:oryCun2:12:50335248:50338444:1 gene:ENSOCUG00000006311 transcript:ENSOCUT000000... gi\|57095050, gi\|... - gi\|73973186\|ref\|XP_866965.1\| PREDICTED: similar to protein tyrosine phosphatase 4a1 isoform 2 [Canis... CCDS4965.1_1 - null gi\|123979624, gi... - gi\|61364317\|gb\|AAX42524.1\| protein tyrosine phosphatase type IVA member 1 [synthetic construct], gi\|... gi\|1083833 - gi\|1083833\|pir\|\|A56059 protein-tyrosine-phosphatase (EC 3.1.3.48) PRL-1 - rat TP4A1_MACFA - Protein tyrosine phosphatase type IVA 1 OS=Macaca fascicularis GN=PTP4A1 PE=1 SV=1 gi\|114611665, gi... - gi\|55626904\|ref\|XP_527425.1\| PREDICTED: similar to tyrosine phosphatase isoform 3 [Pan troglodytes],... PTP4A1 - protein tyrosine phosphatase type IVA, member 1 TP4A1_RAT - Protein tyrosine phosphatase type IVA 1 OS=Rattus norvegicus GN=Ptp4a1 PE=1 SV=1	162.0	[0..16]	[190..1]
gi\|148235833, gi... - gi\|50604169\|gb\|AAH77539.1\| Ptp4a1-prov protein [Xenopus laevis], gi\|148235833\|ref\|NP_001086844.1\| pr...	161.0	[0..16]	[190..1]
gi\|39597812, gi\|... - gi\|39597812\|emb\|CAE68504.1\| Hypothetical protein CBG14314 [Caenorhabditis briggsae], gi\|187027817\|em... gi\|157769323 - gi\|157769323\|ref\|XP_001676482.1\| Hypothetical protein CBG14314 [Caenorhabditis briggsae AF16]	161.0	[0..1]	[190..1]
gi\|47212299 - gi\|47212299\|emb\|CAF90562.1\| unnamed protein product [Tetraodon nigroviridis]	160.0	[0..16]	[190..1]
gi\|56118931, gi\|... - gi\|89273414\|emb\|CAJ82646.1\| protein tyrosine phosphatase type IVA, member 1 [Xenopus tropicalis], gi...	160.0	[0..16]	[190..1]
TP4A1_PONPY - Protein tyrosine phosphatase type IVA protein 1 - Pongo pygmaeus (Orangutan) TP4A1_PONAB - Protein tyrosine phosphatase type IVA 1 OS=Pongo abelii GN=PTP4A1 PE=2 SV=1	160.0	[0..16]	[190..1]
gi\|149694125 - gi\|149694125\|ref\|XP_001503912.1\| PREDICTED: similar to protein tyrosine phosphatase type IVA, member... gi\|156081499 - gi\|156081499\|gb\|ABU48595.1\| phosphatase of regenerating liver-2 [Rhinolophus ferrumequinum] gi\|156081501 - gi\|156081501\|gb\|ABU48596.1\| phosphatase of regenerating liver-2 [Myotis ricketti] CCDS348.1_1 - null TP4A2_MOUSE - Protein tyrosine phosphatase type IVA 2 OS=Mus musculus GN=Ptp4a2 PE=1 SV=1 HGNC:9635\|MIM:60... - tyrosine phosphatase type IVA, member 2 TP4A2_RAT - Protein tyrosine phosphatase type IVA 2 OS=Rattus norvegicus GN=Ptp4a2 PE=2 SV=1 gi\|119888612, gi... - gi\|157279905\|ref\|NP_001098468.1\| protein tyrosine phosphatase type IVA, member 2 [Bos taurus], gi\|15... gi\|117645932, gi... - gi\|117646744\|emb\|CAL37487.1\| hypothetical protein [synthetic construct], gi\|117645932\|emb\|CAL38433.1... gi\|90076902 - gi\|90076902\|dbj\|BAE88131.1\| unnamed protein product [Macaca fascicularis] PTP4A2 - protein tyrosine phosphatase type IVA, member 2	158.0	[0..19]	[190..1]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAVQKRAS TNTVAATTYF KPAPSEIAWG KMRFLITDRP NNSSIQSYIE ELEKHGARAV  60
   61 VRVCEPTYDT LALKEAGIDV LDWQFSDGSP PPPEVIKSWF QLCMTSFKEH PDKSIAVHCV 120
  121 AGLGRAPVLV AIALIEAGMK YEDAVEMIRT QRRGALNQKQ LKFLETYKAN GELRRLRGNV 180
  181 DGKQKSCCIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.045757
Match:	1xm2A
Description:	Crystal structure of Human PRL-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits