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View Structure Prediction Details

Protein: aak-2
Organism: Caenorhabditis elegans
Length: 562 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for aak-2.

Description E-value Query
Range
Subject
Range
gi|187026604, gi... - gi|39596261|emb|CAE69899.1| Hypothetical protein CBG16249 [Caenorhabditis briggsae], gi|187026604|em...
gi|157767314 - gi|157767314|ref|XP_001667137.1| Hypothetical protein CBG16249 [Caenorhabditis briggsae AF16]
462.0 [0..1] [562..1]

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Predicted Domain #1
Region A:
Residues: [1-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSPGGETST KQQQELKAQI KIGHYILKET LGVGTFGKVK VGIHETTQYK VAVKILNRQK  60
   61 IKSLDVVGKI RREIQNLSLF RHPHIIRLYQ VISTPSDIFM IMEHVSGGEL FDYIVKHGRL 120
  121 KTAEARRFFQ QIISGVDYCH RHMVVHRDLK PENLLLDEQN NVKIADFGLS NIMTDGDFLR 180
  181 TSCGSPNYAA PEVISGKLYA GPEVDVWSCG VILYALLCGT LPFDDEHVPS LFRKIKSGVF 240
  241 PTPDFLERPI VNLLHHMLCV DPMKRATIKD VIAHEWFQKD LPNYLFPPIN ESEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.221849
Match: 2h6dA
Description: No description for 2h6dA was found.

Predicted Domain #2
Region A:
Residues: [295-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIVDIEAVRE VTERYHVAEE EVTSALLGDD PHHHLSIAYN LIVDNKRIAD ETAKLSIEEF  60
   61 YQVTPNKGPG PVHRHPERIA ASVSSKITPT LDNTEA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [391-562]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGANRNKRAK WHLGIRSQSR PEDIMFEVFR AMKQLDMEWK VLNPYHVIVR RKPDAPAADP  60
   61 PKMSLQLYQV DQRSYLLDFK SLADEESGSA SASSSRHASM SMPQKPAGIR GTRTSSMPQA 120
  121 MSMEASIEKM EVHDFSDMSC DVTPPPSPGG AKLSQTMQFF EICAALIGTL AR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.154902
Match: 2v8qA
Description: No description for 2v8qA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle