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View Structure Prediction Details

Protein: sft-4
Organism: Caenorhabditis elegans
Length: 277 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sft-4.

Description E-value Query
Range
Subject
Range
gi|76671951 - gi|76671951|ref|XP_604404.2| PREDICTED: similar to SURF-4 [Bos taurus]
358.0 [0..6] [277..84]
gi|33086478 - gi|33086478|gb|AAP92551.1| Ab1-205 [Rattus norvegicus]
355.0 [0..9] [277..2]
gi|85113270 - gi|85113270|ref|XP_964496.1| hypothetical protein NCU03319 [Neurospora crassa OR74A]
gi|32420623, gi|... - gi|32420623|ref|XP_330755.1| hypothetical protein [Neurospora crassa], gi|28926280|gb|EAA35260.1| hy...
346.0 [0..12] [275..37]
gi|145013229, gi... - gi|39959108|ref|XP_364464.1| hypothetical protein MGG_09309 [Magnaporthe grisea 70-15], gb|EAA55502....
346.0 [0..12] [275..37]
gi|2440040 - gi|2440040|emb|CAA75173.1| SURF-4 protein [Caenorhabditis elegans]
345.0 [0..1] [277..1]
gi|157769913 - gi|157769913|ref|XP_001676777.1| Hypothetical protein CBG14749 [Caenorhabditis briggsae AF16]
gi|39598107, gi|... - gi|39598107|emb|CAE68799.1| Hypothetical protein CBG14749 [Caenorhabditis briggsae], gi|187028113|em...
344.0 [0..1] [277..1]
SURF4_MOUSE - Surfeit locus protein 4 OS=Mus musculus GN=Surf4 PE=1 SV=1
gi|55250527 - gb|AAH86249.1| Unknown (protein for MGC:98765) [Xenopus laevis]
gi|76443685, gi|... - gi|76443685|ref|NP_001029040.1| surfeit 4 [Rattus norvegicus], ref|XP_216028.2| similar to Surf-4 pr...
341.0 [0..9] [277..2]
ENSPTRT00000039854 - null
gi|123997081, gi... - gi|123997081|gb|ABM86142.1| surfeit 4 [synthetic construct], gi|123982418|gb|ABM82950.1| surfeit 4 [...
SURF4 - surfeit 4
SURF4_PONPY - Surfeit locus protein 4 - Pongo pygmaeus (Orangutan)
SURF4_PONAB - Surfeit locus protein 4 OS=Pongo abelii GN=SURF4 PE=2 SV=1
341.0 [0..9] [277..2]
gi|66850178, gi|... - gi|70995576|ref|XP_752543.1| COPII-coated vesicle protein SurF4/Erv29 [Aspergillus fumigatus Af293],...
gi|159131298 - gi|159131298|gb|EDP56411.1| COPII-coated vesicle protein SurF4/Erv29, putative [Aspergillus fumigatu...
340.0 [0..12] [275..38]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQFRAPGGQ NEMLAKAEDA AEDFFRKTRT YLPHIARLCL VSTFLEDGIR MYFQWDDQKQ  60
   61 FMQESWSCGW FIATLFVIYN FFGQFIPVLM IMLRKKVLVA CGILASIVIL QTIAYHILWD 120
  121 LKFLARNIAV GGGLLLLLAE TQEEKASLFA GVPTMGDSNK P

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [162-277]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSYMLLAGRV LLIFMFMSLM HFEMSFMQVL EIVVGFALIT LVSIGYKTKL SAIVLVIWLF  60
   61 GLNLWLNAWW TIPSDRFYRD FMKYDFFQTM SVIGGLLLVI AYGPGGVSVD DYKKRW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle