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View Structure Prediction Details

Protein: npr-1
Organism: Caenorhabditis elegans
Length: 457 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npr-1.

Description E-value Query
Range
Subject
Range
gi|73987082 - gi|73987082|ref|XP_542105.2| PREDICTED: similar to olfactory receptor Olr1121 [Canis familiaris]
275.0 [0..1] [285..1]

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Predicted Domain #1
Region A:
Residues: [1-457]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVENFTDCQ VYWKVYPDPS QSIYAIVPFL TVYLFLFFLG LFGNVTLIYV TCSHKALLSV  60
   61 QNIFILNLAA SDCMMCILSL PITPITNVYK NWYFGNLLCH LIPCIQGISI FVCTFSLGAI 120
  121 ALDRYILVVR PHSTPLSQRG AFLTTVLLWI LSFVVTLPYA FNMQMIEYTE ERICGYFCTE 180
  181 KWESAKSRRA YTMIVMLAQF VVPFAVMAFC YANIVSVLSK RAQTKIRKMV ERTSALESSC 240
  241 AFPSHGLEQY ENELNEFLDK QEKEKQRVVL QNRRTTSILV TMVVWFGITW LPHNVISLII 300
  301 EYDDTQSFFR LYGRDDYDIS YLLNLFTHSI AMSNNVLNPV LYAWLNPSFR QLVIKTYFGD 360
  361 RRKSDRIINQ TSVYKTKIVH DTKHLNGRAK IGGGGSHEAL KERELNSCSE NLSYHVNGHT 420
  421 RTPTPEVQLN EVSSPEISKL VAEPEELIEF SVNDTLV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.39794
Match: 1f88A
Description: Rhodopsin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle