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View Structure Prediction Details

Protein: csn-5
Organism: Caenorhabditis elegans
Length: 368 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for csn-5.

Description E-value Query
Range
Subject
Range
gi|66554147, gi|... - gi|66554150|ref|XP_623836.1| PREDICTED: similar to COP9 constitutive photomorphogenic homolog subuni...
327.0 [0..4] [335..3]

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Predicted Domain #1
Region A:
Residues: [1-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVDNVKPSS SVPQRNWEKE NNVQNVDSIF EYNNKQQVEI RNAKPWDKDP HYFKQIKISA  60
   61 IALLKMTMHA KRGGNLEIMG LLQGRIDANS FIILDVFALP VEGTETRVNA QAQAYEYMTV 120
  121 YSEMCDTEGR KEKVVGWYHS HPGYGCWLSG IDVSTQTLNQ KFQEPWVAIV IDPLRTMSAG 180
  181 KVDIGAFRTY PEGYRPPDDV PSEYQSIPLA KIEDFGVHCK RYYSLDVSFF K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 2o95A
Description: No description for 2o95A was found.

Predicted Domain #2
Region A:
Residues: [232-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SQLDAHILTS LWNSYWISTL SSSPLFSNVE FLNNQIQDIN QKLSAVDKKL QLNDRSVDGH  60
   61 EALMKVVTDA KAVGDELETG RISHLVKQLL FARQAGGGCG CSHASAGSPM DIAVATEPEK 120
  121 AGPSPSAPEP AVEMADA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.04
Match: 2npuA
Description: No description for 2npuA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle