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View Structure Prediction Details

Protein: CE06548
Organism: Caenorhabditis elegans
Length: 484 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06548.

Description E-value Query
Range
Subject
Range
gi|46107656, gi|... - gi|46107656|ref|XP_380887.1| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi|42547814|gb|E...
253.0 [0..4] [436..1417]

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Predicted Domain #1
Region A:
Residues: [1-484]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPSADFDTS SLKSYTVSTS RTNLDVRKSN WTSLWFANLI QYFCGLQMSL YFTSMWPYLL  60
   61 KLDPTAQLPF FGIILASFSI GQAVGSPIFG TWTQKTESFK VPVATGLVFC CVGNILYGIL 120
  121 PTIMWEVQWL MLVSRVLIGF GAGNLSALRA YVAASSTLED RNTAVSLATG SQVTGMLTGP 180
  181 ILQTAFAFIG DGVRVFNTFD LDAYTSPAFV LSIVLIIMAV MIFFYFSEDY AGVIDEKKED 240
  241 SDVIIPPFDR RAAVVCIFLW FVIQTIAVNI ESLCSVFTIA MYNWTSHQAI VYGGYIETAS 300
  301 CALSVSQYLV IGLTRVGKID KRIQILFGCI VFCIYYVVLL PWPFYPESLL YNPNVTDGAC 360
  361 TYEWCQYVPK IPFIAYILVY VLCFGIAFPY IGNSIGTLFS EVLGPRQQGT MQGVFAFFGS 420
  421 VGRCAAPLVT TFFFNSSGYT WVSVEMLTFL IIGALSTCIF WKQMIPLELI QKKESISNNN 480
  481 NHKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.39794
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle