YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE06462
Organism: Caenorhabditis elegans
Length: 733 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06462.

Description E-value Query
Range
Subject
Range
gi|157762932 - gi|157762932|ref|XP_001673808.1| Hypothetical protein CBG23146 [Caenorhabditis briggsae AF16]
gi|39591979, gi|... - gi|39591979|emb|CAE75199.1| Hypothetical protein CBG23146 [Caenorhabditis briggsae], gi|187021252|em...
859.0 [0..1] [732..1]

Back

Predicted Domain #1
Region A:
Residues: [1-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGKAEIRR QRENCVIFAG ITYGIIFTLV AVVLGFGVYL HTLVHQENSC SMTYMYRKLE  60
   61 FLEIPLLTPQ SDKYSFSVYN EGHRWWNRST IEAGQIPVLF IPGSQGSGKQ IRSLASVMQN 120
  121 KTEMRYAPFS FRFFAVDFDE EMTFMNGHIV KRQIEYVMKA IRKIQSMMRG NRKIVLVGHS 180
  181 YGGMIALLTT IYPEYQKDVE LIIVKGAPLN KQPLVNDWFS LRFNLLLVNQ WNALQNNNLS 240
  241 HVGVVAYSGG IRDYMIPDEW SILRNVRAVI MKVTIKFSAQ VTNRPLWAID GVSDLGADHL 300
  301 AILWCNEFVR HVSRVLWSYA ENLDTLTGRQ VVQKFYKEDV DRNIKRAKLV RHVNDVPSKE 360
  361 IKIGEKYRGF RVNETQFALL IKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.0
Match: 1cqzA
Description: Epoxide hydrolase, N-terminal domain; Mammalian epoxide hydrolase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [384-515]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRFEVLSVRV NASCVNSMTT VRYDESMMYF KNSSDGAVET WIYRALEKEE VRLVLDVTAP  60
   61 CSIDIQMSPP MTVQLWRFYE IVFSHLHEVG GTMIVISVFF AILVRETLFY STTAVLLTNL 120
  121 VALFFVIHGS TD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [516-733]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YTDTTTLPMA LGYFMALGWR AICFVVDWLI VSRIGFVKTG HLALRDDKLM NGLYLVGSAI  60
   61 TIMARNEGSI VLIILLAYRH HPRAVLLILP TLIPYILKLV GFPWFSTDSL IVYQLQYQPA 120
  121 FYAGGLYLFG LVSNLGNRQI TLRLLVYGLV PAFLYLITSP LELFSGFTLI IFSTARFVTF 180
  181 PSRKSVTPPV PEQERVQVEQ PRPIQNNRQR YNLRNRRR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle