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View Structure Prediction Details

Protein: npp-2
Organism: Caenorhabditis elegans
Length: 598 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for npp-2.

Description E-value Query
Range
Subject
Range
gi|21739412 - gi|21739412|emb|CAD38749.1| hypothetical protein [Homo sapiens]
722.0 [0..18] [595..35]

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Predicted Domain #1
Region A:
Residues: [1-598]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVAREFGI AVSDSSTVFA FLTDKKGFSN KETVLVEKVS QNRQILATPN LRRLVIEMYS  60
   61 VFDKCQKGSS PDAPLDTPTC CTFSRAYRSV LYNAAVSHSS SDFMTDFALW SLYEKLWFGR 120
  121 GDSSICADLI SWANQSFTFS RGAMESAVEY LHPGKTIPEE YWKGVAVSLL SCNFSDCVEL 180
  181 LELHGGGSEC DAFIEALTFF NPENLVDEAL ANTVNEWKDI MRENLTSGKY GSNENFKYLT 240
  241 KLLLGEERYL VSMASRIFDT WWHFLPFFVL VKNPFAGHVE LIELADECRT LFVGEEEEEG 300
  301 AKENDVFWCL ISKDDINFQQ LIASNPWLAV HLVDLIHKST LDPEFEVMRK MHMLDYASVL 360
  361 ISHSPLWEIG AGYLIACGTE GLLRLETHIE GLHIEDDEMA EQLLEICEEH RLEDAKSCVT 420
  421 NTMTFRYLKQ GHWSSTLAWA LKTGSKKTID WTVSRIVGSS SKDELAALRV LSSITNHSVL 480
  481 SLPSLTFLYS YQRFVKMMHC GDVLDCVQHL IPLIMMPDVP TQYYYDLFDY LITIIKEDGR 540
  541 AGIRFSKEIL YELSTFLSTF TLDKHRDLND NYMKKVKVLK KMVMLKLTDS IAKGIACS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.09
Match: 2qx5A
Description: No description for 2qx5A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle