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View Structure Prediction Details

Protein: sqt-3
Organism: Caenorhabditis elegans
Length: 301 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sqt-3.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
261.0 [0..47] [299..1398]

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Predicted Domain #1
Region A:
Residues: [1-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METDGRLKAY KFVAYAAVGF SIAAVASVLL TLPMVYSYVS HVRQQMHHEI NFCKGSAKDI  60
   61 FAEVNYMKAN AGPVPPRNRT TRQAYGGPEV NPAPNLQCEG CCLPGPPGPA GAPGKPGKPG 120
  121 RPGAPGTPGT PGKPPVAPCE PTTPPPCKPC PQGPPGPPGP PGAPGDPGEA GTPGRPGTDA 180
  181 APGSPGPRGP PGPAGEAGAP GPAGEPGTPA ISEPLTPGAP GEPGDSGPPG PPGPPGAPGN 240
  241 DGPPGPPGPK GAPGPDGPPG VDGQSGPPGP PGPAGTPGEK GICPKYCALD GGVFFEDGTR 300
  301 R

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.0
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle