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View Structure Prediction Details

Protein: secs-1
Organism: Caenorhabditis elegans
Length: 481 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for secs-1.

Description E-value Query
Range
Subject
Range
gi|109073915 - gi|109073915|ref|XP_001082141.1| PREDICTED: soluble liver antigen/liver pancreas antigen [Macaca mul...
302.0 [0..1] [476..13]

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Predicted Domain #1
Region A:
Residues: [1-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKANFGKKEG EYSRLVSKSS NKLLNSLWEK KQIPEEGWSE HTLDLFLSWL SSHDTNNRVD  60
   61 MIPVGAGERE GRVLTPLVQR LHSNLTHGIG RSGNLLEIQP KALGSSMLAC LSNEFAKHAL 120
  121 HLLGLHAVKS CIVVPLCTGM SLSLCMTSWR RRRPKAKYVV WLRIDQKSSL KSIYHAGFEP 180
  181 IIVEPIRDRD SLITDVETVN RIIEQRGEEI LCVMTTTSCF APRSPDNVEA ISAICAAHDV 240
  241 PHLVNNAYGL QSEETIRKIA AAHECGRVDA VVQSLDKNFQ VPVGGAVIAA FKQNHIQSIA 300
  301 QSYPGRASSV PSRDLVLTLL YQGQSAFLEP FGKQKQMFLK MRRKLISFAE NIGECVYEVP 360
  361 ENEISSAMTL STIPPAKQTL FGSILFAKGI TGARVVTSSQ SKTTIEGCEF INFGSHTTEQ 420
  421 HGGYLNIACS VGMTDHELEE LFTRLTSSYA KFVRELAKED ERINSSGRRI PINESFDMEN 480
  481 D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.522879
Match: 2jisA
Description: No description for 2jisA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle