YRC Public Data Repository - Protein Structure Prediction

Protein:	aqp-6
Organism:	Caenorhabditis elegans
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for aqp-6.

Description	E-value	Query Range	Subject Range
gi\|69111664 - gi\|69111664\|gb\|AAZ03394.1\| Aqp4-Luc fusion protein [Reporter vector pmuAqp4-Luc]	219.0	[0..9]	[243..11]
gi\|69111702 - gi\|69111702\|gb\|AAZ03395.1\| Aqp4-Luc fusion protein [Reporter vector praAqp4-Luc]	217.0	[0..9]	[243..11]
gi\|89212808 - gi\|89212808\|gb\|ABD63904.1\| aquaporin 1 [Gossypium hirsutum]	214.0	[0..4]	[236..44]
gi\|38198152, gi\|... - gi\|38198152\|emb\|CAE53882.1\| aquaporin [Ricinus communis], gi\|255571849\|ref\|XP_002526867.1\| Aquaporin...	213.0	[0..4]	[236..46]
gi\|2373401 - gi\|2373401\|dbj\|BAA22097.1\| transmembrane protein [Arabidopsis thaliana]	213.0	[0..4]	[236..45]
gi\|57336888 - gi\|57336888\|emb\|CAH60719.1\| putative plasma membrane intrinsic protein [Populus tremula x Populus tr...	210.0	[0..4]	[234..46]
gi\|116311126, gi... - gi\|125549323\|gb\|EAY95145.1\| hypothetical protein OsI_16963 [Oryza sativa Indica Group], gi\|116311126... PIP12_ORYSJ - Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3	210.0	[0..4]	[236..46]
gi\|115459788, gi... - gi\|50927737\|ref\|XP_473424.1\| OSJNBb0034G17.15 [Oryza sativa (japonica cultivar-group)], gi\|38605857\|...	210.0	[0..4]	[243..11]

Back

Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEDEKDYTI YSKCAAEFIA VLLFVYIGSM QAAGVFLHDG VLHAAFAHGV AIFVLAATFG  60
   61 GVSGAHINPA VTFGIALVGR ISPIHAVCYV VSQLLGSVFG ALLVRISLPY KMYNVISAGA 120
  121 TLCGKGYNWQ EGLTAEIVTT YILVQTVLLC AVDTDKNRLA PLAIGFSLII EILAAGAISG 180
  181 ASMNPARSFG PNIMGQVFLK PEHLDAQYMY WNYHWIYYIG PIIGAFIAAG VYRMFFARDY 240
  241 RVLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	2b5fA
Description:	Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits