YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CE05235
Organism: Caenorhabditis elegans
Length: 578 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE05235.

Description E-value Query
Range
Subject
Range
gi|187021277, gi... - gi|39591954|emb|CAE75174.1| Hypothetical protein CBG23111 [Caenorhabditis briggsae], gi|187021277|em...
gi|157762982 - gi|157762982|ref|XP_001673833.1| Hypothetical protein CBG23111 [Caenorhabditis briggsae AF16]
447.0 [0..1] [578..1]

Back

Predicted Domain #1
Region A:
Residues: [1-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYKRLKIDE CRDGVFNIRR KVFIEEQNCP ESMEWDENEE QSSIYFVAFK GDLAVGCVRL  60
   61 RNIEKDLLKL ERVAVLKEFR RRRIASDLIR EALIYAQSES PNSPVYAYAQ VSALQAYVNL 120
  121 GFTVLSKVWI EDGTFIPHQT IFWGTPISID TFLKNQSEKA DPSYEDYDAR SPAMLPKIEA 180
  181 FKQRLEDLDT WNFGILQIHL DDQVVSKLIR NLFSRFSTNV DHFLNGNTEF SKEIVDQSEF 240
  241 LLKLADTKLN TGHFNEVDEN WRKLYSLICF CQSFMMFKQN KYEIAIKIAD KGLCMGRID

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.30103
Match: 2ozgA
Description: No description for 2ozgA was found.

Predicted Domain #2
Region A:
Residues: [300-578]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDLVPIRQLA WLIHENLPGV SSDDWIHSSF QFNTTNTYPA LIPLSNSKSI DECDEDDENS  60
   61 FEKLISAVQN NTPLIVRRHS SNMPAIEKWS FPFLLQELHS RTFPVEIGTK YSDENWSQKL 120
  121 MTFKEFIRNS ENERLYLAQH RLFDQVPHLK RDVIIPDVCF GESSNPENVD MNMWIGPQDT 180
  181 VSPLHTDPRK NMFVQVHGTK LFRMVAPESS ESVYPFDGIL SNTSQVDVEN PDLKIFPNFE 240
  241 QVEVLDAVIN PGDAIFIPEK WWHFVRSTSP SISISFWFD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.522879
Match: 1iz3A
Description: Hypoxia-inducible factor HIF ihhibitor (FIH1)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle