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View Structure Prediction Details

Protein: mup-2
Organism: Caenorhabditis elegans
Length: 405 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mup-2.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
193.0 [0..15] [404..1845]

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Predicted Domain #1
Region A:
Residues: [1-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEEEVYSD EEVEEEEVEE TEEAPAEAEE PEETTEEVVA PPEVKERRAP VQEEKPPAEM  60
   61 TEAEIAMLAA KKRHEEEEAA KLLDYEQRRV LEKEQIEQEL RELKEKQEKR RAEREEDERQ 120
  121 FAERRRQDDE RRRKEEDERK AKADAEKIRK NEEKVRRQQM MAGAFNGRVE AGAGRNFTVA 180
  181 SKGDQAAQFG NLAQAKGGKD VMSKEQMEDA KRNFLAAVCR VQDVSGLLPN DLKERIRGLH 240
  241 ARIVKLEAEK YDLEKRRERQ DYDMKELHER QRQAARNKAL KKGLDPEEAA SSVHPPKITT 300
  301 ASKFDRQTDR RSYGDRRYLF ENPEEEKQAS LVRGTGRPPA EWGRKQNEEL EQIRKNLEPP 360
  361 KYVEQVKVEG ARAPVEPVPL FVPTDDFEPQ QVTEDPNVGE EVVVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle