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View Structure Prediction Details

Protein: CE04978
Organism: Caenorhabditis elegans
Length: 179 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04978.

Description E-value Query
Range
Subject
Range
CE33453 - A. faecalis PHB depolymerase status:Confirmed UniProt:Q86ND6 protein_id:AAO38593.1
240.0 [0..16] [179..445]
gi|157750452 - gi|157750452|ref|XP_001678939.1| Hypothetical protein CBG11222 [Caenorhabditis briggsae AF16]
gi|187030550, gi... - gi|39590290|emb|CAE66028.1| Hypothetical protein CBG11222 [Caenorhabditis briggsae], gi|187030550|em...
203.0 [0..19] [179..10]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAKGKNRDL GTHILCYNVI DFVSNNLYNS TNYDFSTVTE TINIPYAHTD YYGSYLLQYG  60
   61 GAKSLMALQS NIDTLFSNSI FSIDTTVSDG LIWLSDNYPD GANTIVIVVG YHSDDDNGRT 120
  121 YTTLTHLRSR GYKVISVAAG VGHGDLSYIA DESEWYFQVD NSTGGQNVAD QISSIICKL

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Detection Method: FFAS03
Confidence: 1.19
Match: 1aoxA
Description: Integrin alpha2-beta1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle