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View Structure Prediction Details

Protein: CE04507
Organism: Caenorhabditis elegans
Length: 511 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE04507.

Description E-value Query
Range
Subject
Range
gi|26338628 - gi|26338628|dbj|BAC32985.1| unnamed protein product [Mus musculus]
592.0 [0..11] [509..4]

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Predicted Domain #1
Region A:
Residues: [1-57]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKEVDFER ESHLHAVMCF LTGQSGEKIV SIYPHRKPAT KAPSKDPQPS SSNPGQC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [58-192]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKPVLTSVKD PSYGFGRVDT EFDMSLGMLA YVFKTQEIAC NDGFDMKINN QRFVAYPKTW  60
   61 KARGESTNYQ ISIVFALKNG CEQHTASAYQ TLSNKIAVSL VMLQNYFGFL EREDKWADNA 120
  121 EEPNKDHPLE EFAKT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [193-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFIVQPLAEM FEEVRNRGNI HKYLINFVEL GFCDEAHALT KLNVVPKGRQ EIDEIVRKMK  60
   61 PYHGILLLED VWPT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [267-432]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDANPIVAKL LSHCSPDRSI LDMSTASGIP IFEVFMIIRH LLQWTRAILI YPLCNTNIYT  60
   61 SATSPQPLDK MAEKFTAQFG NTIHLAAGLA HFNPPKTLDT FIRKNLPLHE QGVRAKLVVA 120
  121 LLRHQMLMQL HQFYYILKPY SIAILPEPKE PCPAEFTKII EESTLP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [433-511]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDVKGVVADI CAEMLETTSY ASVKRTLSLF VKVAPMMDGN HHLEEIKYKN NLDRTEIEGV  60
   61 FVSFKLVIAT FRRPDFVAE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle